Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Ptrichocarpa_Potri.006G070700 Potri.006G070700 |
Chr06 | 5271194 | 5276472 | Phytozome | v3.0 | Populus_trichocarpa | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Ptrichocarpa_Potri.006G070700.1 Potri.006G070700.1 PAC:27005659 |
Low | No | 768 | Get ORF Coding potential... Type: noncoding Potential: -0.462 Folding energies... MFEI: -22.031 AMFE: -0.514 GC content %: 42.839 | |
Ptrichocarpa_Potri.006G070700.2 Potri.006G070700.2 PAC:27005660 |
Low | No | 916 | Get ORF Coding potential... Type: noncoding Potential: -0.586 Folding energies... MFEI: -23.504 AMFE: -0.558 GC content %: 42.140 | |
Ptrichocarpa_Potri.006G070700.3 Potri.006G070700.3 PAC:27005661 |
Low | No | 1236 | Get ORF Coding potential... Type: noncoding Potential: -1.100 Folding energies... MFEI: -22.638 AMFE: -0.541 GC content %: 41.828 | |
Ptrichocarpa_Potri.006G070700.4 Potri.006G070700.4 PAC:27005662 |
Low | No | 1594 | Get ORF Coding potential... Type: noncoding Potential: -1.122 Folding energies... MFEI: -22.999 AMFE: -0.642 GC content %: 35.822 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Ptrichocarpa_Potri.006G070700.1 | SwissProt | 2015-06-01 | Q6DJI4 | 6.0e-11 |
Ptrichocarpa_Potri.006G070700.2 | SwissProt | 2015-06-01 | Q6DJI4 | 9.0e-11 |
Ptrichocarpa_Potri.006G070700.3 | SwissProt | 2015-06-01 | Q6DJI4 | 2.0e-10 |
Ptrichocarpa_Potri.006G070700.4 | SwissProt | 2015-06-01 | Q6DJI4 | 4.0e-10 |