GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ptrichocarpa_Potri.006G204100 Potri.006G204100	Chr06	21938856	21942347	Phytozome	v3.0	Populus_trichocarpa	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ptrichocarpa_Potri.006G204100.1 Potri.006G204100.1 PAC:27006379	High	No	1541		Get ORF Coding potential... Type: noncoding Potential: -1.189 Folding energies... MFEI: -26.671 AMFE: -0.669 GC content %: 39.844
Ptrichocarpa_Potri.006G204100.2 Potri.006G204100.2 PAC:27006378	High	No	1530		Get ORF Coding potential... Type: noncoding Potential: -1.188 Folding energies... MFEI: -26.987 AMFE: -0.678 GC content %: 39.804
Ptrichocarpa_Potri.006G204100.3 Potri.006G204100.3 PAC:27006380	High	No	1271		Get ORF Coding potential... Type: noncoding Potential: -1.165 Folding energies... MFEI: -25.987 AMFE: -0.697 GC content %: 37.293
Ptrichocarpa_Potri.006G204100.4 Potri.006G204100.4 PAC:27006381	High	No	1396		Get ORF Coding potential... Type: noncoding Potential: -1.177 Folding energies... MFEI: -26.196 AMFE: -0.686 GC content %: 38.181

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).