GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ptrichocarpa_Potri.006G206100 Potri.006G206100	Chr06	22171010	22175503	Phytozome	v3.0	Populus_trichocarpa	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ptrichocarpa_Potri.006G206100.1 Potri.006G206100.1 PAC:27007389	High	No	824		Get ORF Coding potential... Type: noncoding Potential: -0.620 Folding energies... MFEI: -21.068 AMFE: -0.571 GC content %: 36.893
Ptrichocarpa_Potri.006G206100.2 Potri.006G206100.2 PAC:27007388	High	No	821		Get ORF Coding potential... Type: noncoding Potential: -0.619 Folding energies... MFEI: -20.877 AMFE: -0.568 GC content %: 36.784

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).