Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Ptrichocarpa_Potri.007G100900 Potri.007G100900 |
Chr07 | 12639223 | 12642690 | Phytozome | v3.0 | Populus_trichocarpa | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Ptrichocarpa_Potri.007G100900.2 Potri.007G100900.2 PAC:27015876 |
Low | No | 1314 | Get ORF Coding potential... Type: noncoding Potential: -0.358 Folding energies... MFEI: -28.189 AMFE: -0.685 GC content %: 41.172 | |
Ptrichocarpa_Potri.007G100900.3 Potri.007G100900.3 PAC:27015877 |
Low | No | 711 | Get ORF Coding potential... Type: noncoding Potential: -0.201 Folding energies... MFEI: -26.343 AMFE: -0.598 GC content %: 44.023 | |
Ptrichocarpa_Potri.007G100900.4 Potri.007G100900.4 PAC:27015874 |
Low | No | 740 | Get ORF Coding potential... Type: noncoding Potential: -0.212 Folding energies... MFEI: -26.189 AMFE: -0.596 GC content %: 43.919 | |
Ptrichocarpa_Potri.007G100900.5 Potri.007G100900.5 PAC:27015875 |
Low | No | 746 | Get ORF Coding potential... Type: noncoding Potential: -0.233 Folding energies... MFEI: -26.233 AMFE: -0.598 GC content %: 43.834 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Ptrichocarpa_Potri.007G100900.3 | SwissProt | 2015-06-01 | A7IPQ4 | 1.0e-8 |
Ptrichocarpa_Potri.007G100900.4 | SwissProt | 2015-06-01 | A7IPQ4 | 1.0e-8 |
Ptrichocarpa_Potri.007G100900.5 | SwissProt | 2015-06-01 | A7IPQ4 | 1.0e-8 |
Ptrichocarpa_Potri.007G100900.2 | SwissProt | 2015-06-01 | A7IPQ4 | 6.0e-8 |