GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ptrichocarpa_Potri.008G179400 Potri.008G179400	Chr08	12239688	12240788	Phytozome	v3.0	Populus_trichocarpa	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ptrichocarpa_Potri.008G179400.1 Potri.008G179400.1 PAC:27037519	High	No	523		Get ORF Coding potential... Type: noncoding Potential: -0.879 Folding energies... MFEI: -25.602 AMFE: -0.647 GC content %: 39.579
Ptrichocarpa_Potri.008G179400.2 Potri.008G179400.2 PAC:27037518	High	No	892		Get ORF Coding potential... Type: noncoding Potential: -1.060 Folding energies... MFEI: -26.312 AMFE: -0.657 GC content %: 40.022
Ptrichocarpa_Potri.008G179400.3 Potri.008G179400.3 PAC:27037520	High	No	390		Get ORF Coding potential... Type: noncoding Potential: -0.844 Folding energies... MFEI: -22.462 AMFE: -0.654 GC content %: 34.359

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).