GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ptrichocarpa_Potri.008G185900 Potri.008G185900	Chr08	12745827	12746863	Phytozome	v3.0	Populus_trichocarpa	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ptrichocarpa_Potri.008G185900.1 Potri.008G185900.1 PAC:27038003	High	No	1037		Get ORF Coding potential... Type: noncoding Potential: -1.092 Folding energies... MFEI: -22.015 AMFE: -0.593 GC content %: 37.126
Ptrichocarpa_Potri.008G185900.2 Potri.008G185900.2 PAC:27038004	High	No	934		Get ORF Coding potential... Type: noncoding Potential: -1.094 Folding energies... MFEI: -21.788 AMFE: -0.586 GC content %: 37.152

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).