Gene
Ptrichocarpa Potri.008G186200
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Ptrichocarpa_Potri.008G186200 Potri.008G186200 |
Chr08 | 12796463 | 12798060 | Phytozome | v3.0 | Populus_trichocarpa | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Ptrichocarpa_Potri.008G186200.1 Potri.008G186200.1 PAC:27038396 |
High | No | 716 | Get ORF Coding potential... Type: noncoding Potential: -0.907 Folding energies... MFEI: -26.061 AMFE: -0.622 GC content %: 41.899 | |
| Ptrichocarpa_Potri.008G186200.2 Potri.008G186200.2 PAC:27038398 |
High | No | 1488 | Get ORF Coding potential... Type: noncoding Potential: -1.074 Folding energies... MFEI: -23.474 AMFE: -0.598 GC content %: 39.247 | |
| Ptrichocarpa_Potri.008G186200.3 Potri.008G186200.3 PAC:27038397 |
High | No | 1389 | Get ORF Coding potential... Type: noncoding Potential: -1.061 Folding energies... MFEI: -23.722 AMFE: -0.602 GC content %: 39.381 | |
| Ptrichocarpa_Potri.008G186200.4 Potri.008G186200.4 PAC:27038399 |
High | No | 1346 | Get ORF Coding potential... Type: noncoding Potential: -1.055 Folding energies... MFEI: -23.395 AMFE: -0.590 GC content %: 39.673 | |
| Ptrichocarpa_Potri.008G186200.5 Potri.008G186200.5 PAC:27038400 |
High | No | 1324 | Get ORF Coding potential... Type: noncoding Potential: -1.052 Folding energies... MFEI: -24.147 AMFE: -0.604 GC content %: 39.955 | |
| Ptrichocarpa_Potri.008G186200.6 Potri.008G186200.6 PAC:27038402 |
High | No | 932 | Get ORF Coding potential... Type: noncoding Potential: -0.975 Folding energies... MFEI: -24.496 AMFE: -0.602 GC content %: 40.665 | |
| Ptrichocarpa_Potri.008G186200.7 Potri.008G186200.7 PAC:27038401 |
High | No | 952 | Get ORF Coding potential... Type: noncoding Potential: -0.981 Folding energies... MFEI: -24.086 AMFE: -0.593 GC content %: 40.651 | |
| Ptrichocarpa_Potri.008G186200.8 Potri.008G186200.8 PAC:27038403 |
High | No | 981 | Get ORF Coding potential... Type: noncoding Potential: -0.988 Folding energies... MFEI: -23.863 AMFE: -0.594 GC content %: 40.163 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
