GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ptrichocarpa_Potri.009G069000 Potri.009G069000	Chr09	6821845	6824495	Phytozome	v3.0	Populus_trichocarpa	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ptrichocarpa_Potri.009G069000.2 Potri.009G069000.2 PAC:26988503	High	No	769		Get ORF Coding potential... Type: noncoding Potential: -0.154 Folding energies... MFEI: -24.746 AMFE: -0.665 GC content %: 37.191
Ptrichocarpa_Potri.009G069000.3 Potri.009G069000.3 PAC:26988504	High	No	757		Get ORF Coding potential... Type: noncoding Potential: -0.478 Folding energies... MFEI: -23.937 AMFE: -0.640 GC content %: 37.384
Ptrichocarpa_Potri.009G069000.4 Potri.009G069000.4 PAC:26988505	High	No	634		Get ORF Coding potential... Type: noncoding Potential: -0.669 Folding energies... MFEI: -24.211 AMFE: -0.619 GC content %: 39.117
Ptrichocarpa_Potri.009G069000.5 Potri.009G069000.5 PAC:26988506	High	No	1063		Get ORF Coding potential... Type: noncoding Potential: -0.766 Folding energies... MFEI: -24.440 AMFE: -0.656 GC content %: 37.253

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).