GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ptrichocarpa_Potri.010G093100 Potri.010G093100	Chr10	11619742	11622776	Phytozome	v3.0	Populus_trichocarpa	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ptrichocarpa_Potri.010G093100.1 Potri.010G093100.1 PAC:26979923	High	No	2628		Get ORF Coding potential... Type: noncoding Potential: -0.587 Folding energies... MFEI: -25.894 AMFE: -0.661 GC content %: 39.193
Ptrichocarpa_Potri.010G093100.2 Potri.010G093100.2 PAC:26979922	High	No	2624		Get ORF Coding potential... Type: noncoding Potential: -0.587 Folding energies... MFEI: -25.880 AMFE: -0.661 GC content %: 39.177
Ptrichocarpa_Potri.010G093100.3 Potri.010G093100.3 PAC:26979924	High	No	2561		Get ORF Coding potential... Type: noncoding Potential: -0.775 Folding energies... MFEI: -26.166 AMFE: -0.665 GC content %: 39.321
Ptrichocarpa_Potri.010G093100.4 Potri.010G093100.4 PAC:26979925	High	No	2565		Get ORF Coding potential... Type: noncoding Potential: -0.776 Folding energies... MFEI: -26.179 AMFE: -0.666 GC content %: 39.337

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).