Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Ptrichocarpa_Potri.010G248800 Potri.010G248800 |
Chr10 | 22207572 | 22209571 | Phytozome | v3.0 | Populus_trichocarpa | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Ptrichocarpa_Potri.010G248800.1 Potri.010G248800.1 PAC:26978691 |
Low | No | 511 | Get ORF Coding potential... Type: noncoding Potential: -0.837 Folding energies... MFEI: -25.695 AMFE: -0.634 GC content %: 40.509 | |
Ptrichocarpa_Potri.010G248800.2 Potri.010G248800.2 PAC:26978692 |
Low | No | 786 | Get ORF Coding potential... Type: noncoding Potential: -1.054 Folding energies... MFEI: -26.616 AMFE: -0.654 GC content %: 40.712 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Ptrichocarpa_Potri.010G248800.2 | SwissProt | 2015-06-01 | Q28CA1 | 4.0e-8 |
Ptrichocarpa_Potri.010G248800.1 | SwissProt | 2015-06-01 | O42921 | 8.0e-4 |