GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ptrichocarpa_Potri.013G128400 Potri.013G128400	Chr13	14067519	14069036	Phytozome	v3.0	Populus_trichocarpa	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ptrichocarpa_Potri.013G128400.1 Potri.013G128400.1 PAC:26995478	High	No	876		Get ORF Coding potential... Type: noncoding Potential: -1.070 Folding energies... MFEI: -23.995 AMFE: -0.643 GC content %: 37.329
Ptrichocarpa_Potri.013G128400.2 Potri.013G128400.2 PAC:26995479	High	No	863		Get ORF Coding potential... Type: noncoding Potential: -1.069 Folding energies... MFEI: -24.032 AMFE: -0.640 GC content %: 37.543

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).