GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ptrichocarpa_Potri.014G173700 Potri.014G173700	Chr14	14085285	14088026	Phytozome	v3.0	Populus_trichocarpa	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ptrichocarpa_Potri.014G173700.1 Potri.014G173700.1 PAC:27032491	High	No	518		Get ORF Coding potential... Type: noncoding Potential: -0.884 Folding energies... MFEI: -23.919 AMFE: -0.568 GC content %: 42.085
Ptrichocarpa_Potri.014G173700.2 Potri.014G173700.2 PAC:27032492	High	No	705		Get ORF Coding potential... Type: noncoding Potential: -0.977 Folding energies... MFEI: -24.468 AMFE: -0.595 GC content %: 41.135
Ptrichocarpa_Potri.014G173700.3 Potri.014G173700.3 PAC:27032493	High	No	523		Get ORF Coding potential... Type: noncoding Potential: -0.915 Folding energies... MFEI: -23.786 AMFE: -0.568 GC content %: 41.874

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).