GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ptrichocarpa_Potri.015G062300 Potri.015G062300	Chr15	8535710	8536622	Phytozome	v3.0	Populus_trichocarpa	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ptrichocarpa_Potri.015G062300.1 Potri.015G062300.1 PAC:27018139	High	No	697		Get ORF Coding potential... Type: noncoding Potential: -0.892 Folding energies... MFEI: -25.122 AMFE: -0.658 GC content %: 38.164
Ptrichocarpa_Potri.015G062300.2 Potri.015G062300.2 PAC:27018140	High	No	688		Get ORF Coding potential... Type: noncoding Potential: -0.881 Folding energies... MFEI: -24.666 AMFE: -0.650 GC content %: 37.936

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).