GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ptrichocarpa_Potri.016G038300 Potri.016G038300	Chr16	2358683	2361582	Phytozome	v3.0	Populus_trichocarpa	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ptrichocarpa_Potri.016G038300.1 Potri.016G038300.1 PAC:27012304	High	No	661		Get ORF Coding potential... Type: noncoding Potential: -0.990 Folding energies... MFEI: -26.021 AMFE: -0.685 GC content %: 37.973
Ptrichocarpa_Potri.016G038300.2 Potri.016G038300.2 PAC:27012303	High	No	747		Get ORF Coding potential... Type: noncoding Potential: -1.012 Folding energies... MFEI: -26.640 AMFE: -0.698 GC content %: 38.153
Ptrichocarpa_Potri.016G038300.3 Potri.016G038300.3 PAC:27012302	High	No	656		Get ORF Coding potential... Type: noncoding Potential: -0.988 Folding energies... MFEI: -25.030 AMFE: -0.659 GC content %: 37.957
Ptrichocarpa_Potri.016G038300.4 Potri.016G038300.4 PAC:27012305	High	No	313		Get ORF Coding potential... Type: noncoding Potential: -0.810 Folding energies... MFEI: -26.390 AMFE: -0.616 GC content %: 42.812

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).