GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ptrichocarpa_Potri.016G115600 Potri.016G115600	Chr16	11998800	12001850	Phytozome	v3.0	Populus_trichocarpa	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ptrichocarpa_Potri.016G115600.4 Potri.016G115600.4 PAC:27011786	High	No	575		Get ORF Coding potential... Type: noncoding Potential: -1.146 Folding energies... MFEI: -23.496 AMFE: -0.598 GC content %: 39.304
Ptrichocarpa_Potri.016G115600.5 Potri.016G115600.5 PAC:27011787	High	No	626		Get ORF Coding potential... Type: noncoding Potential: -1.342 Folding energies... MFEI: -21.997 AMFE: -0.579 GC content %: 38.019
Ptrichocarpa_Potri.016G115600.6 Potri.016G115600.6 PAC:27011789	High	No	569		Get ORF Coding potential... Type: noncoding Potential: -1.185 Folding energies... MFEI: -19.824 AMFE: -0.530 GC content %: 37.434

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).