Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Ptrichocarpa_Potri.016G141500 Potri.016G141500 |
Chr16 | 14306616 | 14312577 | Phytozome | v3.0 | Populus_trichocarpa | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Ptrichocarpa_Potri.016G141500.1 Potri.016G141500.1 PAC:27012087 |
Low | No | 565 | Get ORF Coding potential... Type: noncoding Potential: -0.805 Folding energies... MFEI: -21.575 AMFE: -0.554 GC content %: 38.938 | |
Ptrichocarpa_Potri.016G141500.2 Potri.016G141500.2 PAC:27012088 |
High | No | 754 | Get ORF Coding potential... Type: noncoding Potential: -0.836 Folding energies... MFEI: -18.103 AMFE: -0.477 GC content %: 37.931 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Ptrichocarpa_Potri.016G141500.1 | RepBase (RepeatMasker) | 2014-01-31 | Gypsy8-PTR_LTR |