GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ptrichocarpa_Potri.018G068300 Potri.018G068300	Chr18	8720562	8723927	Phytozome	v3.0	Populus_trichocarpa	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ptrichocarpa_Potri.018G068300.4 Potri.018G068300.4 PAC:27010775	High	No	821		Get ORF Coding potential... Type: noncoding Potential: -0.977 Folding energies... MFEI: -22.911 AMFE: -0.567 GC content %: 40.438
Ptrichocarpa_Potri.018G068300.5 Potri.018G068300.5 PAC:27010776	High	No	830		Get ORF Coding potential... Type: noncoding Potential: -0.980 Folding energies... MFEI: -23.012 AMFE: -0.570 GC content %: 40.361
Ptrichocarpa_Potri.018G068300.6 Potri.018G068300.6 PAC:27010778	High	No	827		Get ORF Coding potential... Type: noncoding Potential: -1.058 Folding energies... MFEI: -22.624 AMFE: -0.560 GC content %: 40.387
Ptrichocarpa_Potri.018G068300.7 Potri.018G068300.7 PAC:27010777	High	No	863		Get ORF Coding potential... Type: noncoding Potential: -0.990 Folding energies... MFEI: -25.145 AMFE: -0.615 GC content %: 40.904

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).