GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ptrichocarpa_Potri.019G077100 Potri.019G077100	Chr19	11107121	11108654	Phytozome	v3.0	Populus_trichocarpa	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ptrichocarpa_Potri.019G077100.1 Potri.019G077100.1 PAC:27025439	High	No	902		Get ORF Coding potential... Type: noncoding Potential: -0.753 Folding energies... MFEI: -21.341 AMFE: -0.558 GC content %: 38.248
Ptrichocarpa_Potri.019G077100.2 Potri.019G077100.2 PAC:27025440	High	No	1013		Get ORF Coding potential... Type: noncoding Potential: -0.768 Folding energies... MFEI: -21.797 AMFE: -0.575 GC content %: 37.907

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).