GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ptrichocarpa_Potri.T039000 Potri.T039000	scaffold_38	210749	212833	Phytozome	v3.0	Populus_trichocarpa	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ptrichocarpa_Potri.T039000.1 Potri.T039000.1 PAC:26989046	High	No	697		Get ORF Coding potential... Type: noncoding Potential: -1.040 Folding energies... MFEI: -26.428 AMFE: -0.633 GC content %: 41.750
Ptrichocarpa_Potri.T039000.2 Potri.T039000.2 PAC:26989044	High	No	553		Get ORF Coding potential... Type: noncoding Potential: -0.978 Folding energies... MFEI: -25.479 AMFE: -0.610 GC content %: 41.772
Ptrichocarpa_Potri.T039000.3 Potri.T039000.3 PAC:26989045	High	No	654		Get ORF Coding potential... Type: noncoding Potential: -1.023 Folding energies... MFEI: -25.382 AMFE: -0.624 GC content %: 40.673
Ptrichocarpa_Potri.T039000.4 Potri.T039000.4 PAC:26989047	High	No	798		Get ORF Coding potential... Type: noncoding Potential: -1.073 Folding energies... MFEI: -26.855 AMFE: -0.657 GC content %: 40.852

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).