GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Pvirgatum_Pavir.Ca00277 Pavir.Ca00277	Chr03a	3126270	3129565	Phytozome		[[Species:|]]"Species:" cannot be used as a page name in this wiki.	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Pvirgatum_Pavir.Ca00277.2 Pavir.Ca00277.2 PAC:30207080	High	No	2075		Get ORF Coding potential... Type: noncoding Potential: -0.622 Folding energies... MFEI: -25.937 AMFE: -0.656 GC content %: 39.518
Pvirgatum_Pavir.Ca00277.3 Pavir.Ca00277.3 PAC:30207077	High	No	1179		Get ORF Coding potential... Type: noncoding Potential: -0.543 Folding energies... MFEI: -28.999 AMFE: -0.670 GC content %: 43.257
Pvirgatum_Pavir.Ca00277.4 Pavir.Ca00277.4 PAC:30207078	High	No	2164		Get ORF Coding potential... Type: noncoding Potential: -0.627 Folding energies... MFEI: -26.460 AMFE: -0.672 GC content %: 39.372

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).