GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Pvulgaris_Phvul.001G123500 Phvul.001G123500	Chr01	34748963	34749250	Phytozome	v1.0	Phaseolus_vulgaris	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Pvulgaris_Phvul.001G123500.1 Phvul.001G123500.1 PAC:27163398	High	No	288		Get ORF Coding potential... Type: noncoding Potential: -0.856 Folding energies... MFEI: -18.750 AMFE: -0.486 GC content %: 38.542

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).