GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Pvulgaris_Phvul.002G023800 Phvul.002G023800	Chr02	2514739	2515807	Phytozome	v1.0	Phaseolus_vulgaris	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Pvulgaris_Phvul.002G023800.1 Phvul.002G023800.1 PAC:27168569	High	No	790		Get ORF Coding potential... Type: noncoding Potential: -1.048 Folding energies... MFEI: -26.506 AMFE: -0.656 GC content %: 40.380
Pvulgaris_Phvul.002G023800.2 Phvul.002G023800.2 PAC:27168570	High	No	613		Get ORF Coding potential... Type: noncoding Potential: -0.994 Folding energies... MFEI: -27.814 AMFE: -0.643 GC content %: 43.230

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).