GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Pvulgaris_Phvul.002G247400 Phvul.002G247400	Chr02	41404730	41408657	Phytozome	v1.0	Phaseolus_vulgaris	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Pvulgaris_Phvul.002G247400.1 Phvul.002G247400.1 PAC:27169520	High	No	1085		Get ORF Coding potential... Type: noncoding Potential: -0.820 Folding energies... MFEI: -27.714 AMFE: -0.638 GC content %: 43.410
Pvulgaris_Phvul.002G247400.2 Phvul.002G247400.2 PAC:27169521	High	No	1034		Get ORF Coding potential... Type: noncoding Potential: -0.810 Folding energies... MFEI: -27.708 AMFE: -0.632 GC content %: 43.810
Pvulgaris_Phvul.002G247400.3 Phvul.002G247400.3 PAC:27169518	High	No	692		Get ORF Coding potential... Type: noncoding Potential: -0.713 Folding energies... MFEI: -25.910 AMFE: -0.618 GC content %: 41.908
Pvulgaris_Phvul.002G247400.4 Phvul.002G247400.4 PAC:27169519	High	No	641		Get ORF Coding potential... Type: noncoding Potential: -0.692 Folding energies... MFEI: -25.211 AMFE: -0.594 GC content %: 42.434

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).