GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Pvulgaris_Phvul.003G128000 Phvul.003G128000	Chr03	31376735	31378380	Phytozome	v1.0	Phaseolus_vulgaris	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Pvulgaris_Phvul.003G128000.1 Phvul.003G128000.1 PAC:27143158	High	No	559		Get ORF Coding potential... Type: noncoding Potential: -1.051 Folding energies... MFEI: -25.492 AMFE: -0.570 GC content %: 44.723
Pvulgaris_Phvul.003G128000.2 Phvul.003G128000.2 PAC:27143157	High	No	623		Get ORF Coding potential... Type: noncoding Potential: -1.081 Folding energies... MFEI: -25.762 AMFE: -0.599 GC content %: 43.018

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).