GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Pvulgaris_Phvul.004G017800 Phvul.004G017800	Chr04	1846263	1849473	Phytozome	v1.0	Phaseolus_vulgaris	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Pvulgaris_Phvul.004G017800.1 Phvul.004G017800.1 PAC:27156961	High	No	973		Get ORF Coding potential... Type: noncoding Potential: -0.641 Folding energies... MFEI: -25.087 AMFE: -0.607 GC content %: 41.316
Pvulgaris_Phvul.004G017800.2 Phvul.004G017800.2 PAC:27156962	High	No	969		Get ORF Coding potential... Type: noncoding Potential: -0.640 Folding energies... MFEI: -24.850 AMFE: -0.602 GC content %: 41.280
Pvulgaris_Phvul.004G017800.3 Phvul.004G017800.3 PAC:27156963	High	No	863		Get ORF Coding potential... Type: noncoding Potential: -0.652 Folding energies... MFEI: -24.392 AMFE: -0.598 GC content %: 40.788

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).