GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Pvulgaris_Phvul.005G052700 Phvul.005G052700	Chr05	6839253	6840940	Phytozome	v1.0	Phaseolus_vulgaris	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Pvulgaris_Phvul.005G052700.1 Phvul.005G052700.1 PAC:27149689	High	No	622		Get ORF Coding potential... Type: noncoding Potential: -0.893 Folding energies... MFEI: -25.129 AMFE: -0.662 GC content %: 37.942

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).