GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Pvulgaris_Phvul.006G118700 Phvul.006G118700	Chr06	23383040	23385211	Phytozome	v1.0	Phaseolus_vulgaris	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Pvulgaris_Phvul.006G118700.1 Phvul.006G118700.1 PAC:27166769	High	No	619		Get ORF Coding potential... Type: noncoding Potential: -0.568 Folding energies... MFEI: -24.540 AMFE: -0.598 GC content %: 41.034
Pvulgaris_Phvul.006G118700.2 Phvul.006G118700.2 PAC:27166770	High	No	482		Get ORF Coding potential... Type: noncoding Potential: -0.497 Folding energies... MFEI: -24.295 AMFE: -0.558 GC content %: 43.568
Pvulgaris_Phvul.006G118700.3 Phvul.006G118700.3 PAC:27166768	High	No	744		Get ORF Coding potential... Type: noncoding Potential: -0.621 Folding energies... MFEI: -25.874 AMFE: -0.650 GC content %: 39.785
Pvulgaris_Phvul.006G118700.4 Phvul.006G118700.4 PAC:27166771	High	No	607		Get ORF Coding potential... Type: noncoding Potential: -0.562 Folding energies... MFEI: -25.980 AMFE: -0.626 GC content %: 41.516

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).