GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Sbicolor_Sobic.001G068000 Sobic.001G068000	Chr01	5163659	5164832	Phytozome	v3.1	Sorghum_bicolor	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Sbicolor_Sobic.001G068000.1 Sobic.001G068000.1 PAC:32758107	High	No	966		Get ORF Coding potential... Type: noncoding Potential: -1.034 Folding energies... MFEI: -29.762 AMFE: -0.656 GC content %: 45.342
Sbicolor_Sobic.001G068000.2 Sobic.001G068000.2 PAC:32758108	High	No	883		Get ORF Coding potential... Type: noncoding Potential: -1.129 Folding energies... MFEI: -30.544 AMFE: -0.666 GC content %: 45.866

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).