GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Sbicolor_Sobic.002G298700 Sobic.002G298700	Chr02	67445992	67448968	Phytozome	v3.1	Sorghum_bicolor	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Sbicolor_Sobic.002G298700.1 Sobic.002G298700.1 PAC:32766801	Low	Yes	1013		Get ORF Coding potential... Type: noncoding Potential: -1.266 Folding energies... MFEI: -33.791 AMFE: -0.671 GC content %: 50.346
Sbicolor_Sobic.002G298700.2 Sobic.002G298700.2 PAC:32766800	High	No	1932		Get ORF Coding potential... Type: noncoding Potential: -1.297 Folding energies... MFEI: -31.284 AMFE: -0.693 GC content %: 45.135

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).