GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Sbicolor_Sobic.002G308300 Sobic.002G308300	Chr02	68260315	68263256	Phytozome	v3.1	Sorghum_bicolor	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Sbicolor_Sobic.002G308300.1 Sobic.002G308300.1 PAC:32770108	High	No	600		Get ORF Coding potential... Type: noncoding Potential: -0.691 Folding energies... MFEI: -27.933 AMFE: -0.544 GC content %: 51.333
Sbicolor_Sobic.002G308300.2 Sobic.002G308300.2 PAC:32770107	High	No	306		Get ORF Coding potential... Type: noncoding Potential: -0.623 Folding energies... MFEI: -32.614 AMFE: -0.609 GC content %: 53.595
Sbicolor_Sobic.002G308300.3 Sobic.002G308300.3 PAC:32770109	High	No	451		Get ORF Coding potential... Type: noncoding Potential: -0.764 Folding energies... MFEI: -30.576 AMFE: -0.558 GC content %: 54.767

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).