GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Sbicolor_Sobic.003G002800 Sobic.003G002800	Chr03	318011	320615	Phytozome	v3.1	Sorghum_bicolor	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Sbicolor_Sobic.003G002800.2 Sobic.003G002800.2 PAC:32729018	High	No	1144		Get ORF Coding potential... Type: noncoding Potential: -1.015 Folding energies... MFEI: -32.631 AMFE: -0.637 GC content %: 51.224
Sbicolor_Sobic.003G002800.3 Sobic.003G002800.3 PAC:32729015	High	No	1284		Get ORF Coding potential... Type: noncoding Potential: -1.028 Folding energies... MFEI: -31.589 AMFE: -0.626 GC content %: 50.467
Sbicolor_Sobic.003G002800.4 Sobic.003G002800.4 PAC:32729016	High	No	1181		Get ORF Coding potential... Type: noncoding Potential: -1.018 Folding energies... MFEI: -32.100 AMFE: -0.629 GC content %: 51.058
Sbicolor_Sobic.003G002800.5 Sobic.003G002800.5 PAC:32729017	High	No	1013		Get ORF Coding potential... Type: noncoding Potential: -1.083 Folding energies... MFEI: -27.295 AMFE: -0.571 GC content %: 47.779

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).