GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Sbicolor_Sobic.003G053001 Sobic.003G053001	Chr03	4811056	4811927	Phytozome	v3.1	Sorghum_bicolor	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Sbicolor_Sobic.003G053001.1 Sobic.003G053001.1 PAC:32729666	High	No	709		Get ORF Coding potential... Type: noncoding Potential: -0.622 Folding energies... MFEI: -38.533 AMFE: -0.638 GC content %: 60.367
Sbicolor_Sobic.003G053001.2 Sobic.003G053001.2 PAC:32729667	High	No	691		Get ORF Coding potential... Type: noncoding Potential: -0.624 Folding energies... MFEI: -39.334 AMFE: -0.647 GC content %: 60.781

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).