GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Sbicolor_Sobic.003G114000 Sobic.003G114000	Chr03	10266654	10268651	Phytozome	v3.1	Sorghum_bicolor	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Sbicolor_Sobic.003G114000.2 Sobic.003G114000.2 PAC:32732601	High	No	1883		Get ORF Coding potential... Type: noncoding Potential: -1.188 Folding energies... MFEI: -35.327 AMFE: -0.669 GC content %: 52.788
Sbicolor_Sobic.003G114000.3 Sobic.003G114000.3 PAC:32732602	High	No	1596		Get ORF Coding potential... Type: noncoding Potential: -1.165 Folding energies... MFEI: -37.086 AMFE: -0.682 GC content %: 54.386

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).