GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Sbicolor_Sobic.003G185400 Sobic.003G185400	Chr03	49904688	49906730	Phytozome	v3.1	Sorghum_bicolor	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Sbicolor_Sobic.003G185400.2 Sobic.003G185400.2 PAC:32729688	High	No	818		Get ORF Coding potential... Type: noncoding Potential: -1.302 Folding energies... MFEI: -33.790 AMFE: -0.674 GC content %: 50.122
Sbicolor_Sobic.003G185400.3 Sobic.003G185400.3 PAC:32729689	High	No	801		Get ORF Coding potential... Type: noncoding Potential: -1.301 Folding energies... MFEI: -33.945 AMFE: -0.675 GC content %: 50.312
Sbicolor_Sobic.003G185400.4 Sobic.003G185400.4 PAC:32729690	High	No	814		Get ORF Coding potential... Type: noncoding Potential: -1.302 Folding energies... MFEI: -33.993 AMFE: -0.678 GC content %: 50.123

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).