GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Sbicolor_Sobic.003G357400 Sobic.003G357400	Chr03	67567015	67569058	Phytozome	v3.1	Sorghum_bicolor	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Sbicolor_Sobic.003G357400.1 Sobic.003G357400.1 PAC:32733569	High	No	1055		Get ORF Coding potential... Type: noncoding Potential: -1.105 Folding energies... MFEI: -27.318 AMFE: -0.614 GC content %: 44.455
Sbicolor_Sobic.003G357400.2 Sobic.003G357400.2 PAC:32733570	High	No	890		Get ORF Coding potential... Type: noncoding Potential: -1.067 Folding energies... MFEI: -28.011 AMFE: -0.611 GC content %: 45.843

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).