Gene
Sbicolor Sobic.004G164650
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Sbicolor_Sobic.004G164650 Sobic.004G164650 |
Chr04 | 51401414 | 51403878 | Phytozome | v3.1 | Sorghum_bicolor | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Sbicolor_Sobic.004G164650.1 Sobic.004G164650.1 PAC:32744432 |
High | No | 2058 | Get ORF Coding potential... Type: noncoding Potential: -1.204 Folding energies... MFEI: -26.213 AMFE: -0.659 GC content %: 39.747 | |
| Sbicolor_Sobic.004G164650.2 Sobic.004G164650.2 PAC:32744433 |
High | No | 1923 | Get ORF Coding potential... Type: noncoding Potential: -0.997 Folding energies... MFEI: -26.920 AMFE: -0.663 GC content %: 40.614 | |
| Sbicolor_Sobic.004G164650.3 Sobic.004G164650.3 PAC:32744434 |
High | No | 1817 | Get ORF Coding potential... Type: noncoding Potential: -1.196 Folding energies... MFEI: -26.586 AMFE: -0.649 GC content %: 40.947 | |
| Sbicolor_Sobic.004G164650.4 Sobic.004G164650.4 PAC:32744435 |
High | No | 2030 | Get ORF Coding potential... Type: noncoding Potential: -1.019 Folding energies... MFEI: -26.274 AMFE: -0.661 GC content %: 39.754 | |
| Sbicolor_Sobic.004G164650.5 Sobic.004G164650.5 PAC:32744436 |
High | No | 1520 | Get ORF Coding potential... Type: noncoding Potential: -1.168 Folding energies... MFEI: -26.840 AMFE: -0.660 GC content %: 40.658 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
