Gene
Sbicolor Sobic.005G022300
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Sbicolor_Sobic.005G022300 Sobic.005G022300 |
Chr05 | 2039552 | 2044343 | Phytozome | v3.1 | Sorghum_bicolor | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Sbicolor_Sobic.005G022300.1 Sobic.005G022300.1 PAC:32740163 |
Low | Yes | 2054 | Get ORF Coding potential... Type: noncoding Potential: -1.121 Folding energies... MFEI: -34.241 AMFE: -0.684 GC content %: 50.049 | |
| Sbicolor_Sobic.005G022300.2 Sobic.005G022300.2 PAC:32740167 |
High | No | 1642 | Get ORF Coding potential... Type: noncoding Potential: -1.088 Folding energies... MFEI: -34.957 AMFE: -0.671 GC content %: 52.132 | |
| Sbicolor_Sobic.005G022300.4 Sobic.005G022300.4 PAC:32740168 |
High | No | 1769 | Get ORF Coding potential... Type: noncoding Potential: -1.100 Folding energies... MFEI: -34.426 AMFE: -0.668 GC content %: 51.555 | |
| Sbicolor_Sobic.005G022300.5 Sobic.005G022300.5 PAC:32740169 |
High | No | 1752 | Get ORF Coding potential... Type: noncoding Potential: -1.098 Folding energies... MFEI: -34.475 AMFE: -0.668 GC content %: 51.598 | |
| Sbicolor_Sobic.005G022300.6 Sobic.005G022300.6 PAC:32740170 |
High | No | 1754 | Get ORF Coding potential... Type: noncoding Potential: -1.098 Folding energies... MFEI: -34.453 AMFE: -0.668 GC content %: 51.596 | |
| Sbicolor_Sobic.005G022300.7 Sobic.005G022300.7 PAC:32740164 |
High | No | 1673 | Get ORF Coding potential... Type: noncoding Potential: -1.091 Folding energies... MFEI: -34.764 AMFE: -0.669 GC content %: 52.002 | |
| Sbicolor_Sobic.005G022300.8 Sobic.005G022300.8 PAC:32740165 |
High | No | 1740 | Get ORF Coding potential... Type: noncoding Potential: -1.097 Folding energies... MFEI: -34.695 AMFE: -0.670 GC content %: 51.782 | |
| Sbicolor_Sobic.005G022300.9 Sobic.005G022300.9 PAC:32740166 |
High | No | 1663 | Get ORF Coding potential... Type: noncoding Potential: -1.090 Folding energies... MFEI: -35.099 AMFE: -0.673 GC content %: 52.135 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
