GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Sbicolor_Sobic.005G085500 Sobic.005G085500	Chr05	11782225	11783272	Phytozome	v3.1	Sorghum_bicolor	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Sbicolor_Sobic.005G085500.1 Sobic.005G085500.1 PAC:32739933	High	No	860		Get ORF Coding potential... Type: noncoding Potential: -1.195 Folding energies... MFEI: -28.721 AMFE: -0.591 GC content %: 48.605
Sbicolor_Sobic.005G085500.2 Sobic.005G085500.2 PAC:32739936	High	No	760		Get ORF Coding potential... Type: noncoding Potential: -1.175 Folding energies... MFEI: -29.539 AMFE: -0.605 GC content %: 48.816
Sbicolor_Sobic.005G085500.3 Sobic.005G085500.3 PAC:32739935	High	No	739		Get ORF Coding potential... Type: noncoding Potential: -1.170 Folding energies... MFEI: -29.594 AMFE: -0.598 GC content %: 49.526
Sbicolor_Sobic.005G085500.4 Sobic.005G085500.4 PAC:32739934	High	No	779		Get ORF Coding potential... Type: noncoding Potential: -1.179 Folding energies... MFEI: -29.692 AMFE: -0.601 GC content %: 49.422

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).