GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Sbicolor_Sobic.005G211801 Sobic.005G211801	Chr05	69803576	69804209	Phytozome	v3.1	Sorghum_bicolor	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Sbicolor_Sobic.005G211801.1 Sobic.005G211801.1 PAC:32739518	High	No	527		Get ORF Coding potential... Type: noncoding Potential: -0.738 Folding energies... MFEI: -29.924 AMFE: -0.618 GC content %: 48.387
Sbicolor_Sobic.005G211801.2 Sobic.005G211801.2 PAC:32739519	High	No	522		Get ORF Coding potential... Type: noncoding Potential: -0.763 Folding energies... MFEI: -29.674 AMFE: -0.615 GC content %: 48.276

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).