Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Sbicolor_Sobic.007G046950 Sobic.007G046950 |
Chr07 | 4688621 | 4691861 | Phytozome | v3.1 | Sorghum_bicolor | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Sbicolor_Sobic.007G046950.1 Sobic.007G046950.1 PAC:32750682 |
Low | No | 2547 | Get ORF Coding potential... Type: noncoding Potential: -1.085 Folding energies... MFEI: -30.106 AMFE: -0.681 GC content %: 44.209 | |
Sbicolor_Sobic.007G046950.2 Sobic.007G046950.2 PAC:32750683 |
Low | No | 1974 | Get ORF Coding potential... Type: noncoding Potential: -1.297 Folding energies... MFEI: -31.565 AMFE: -0.687 GC content %: 45.947 | |
Sbicolor_Sobic.007G046950.3 Sobic.007G046950.3 PAC:32750684 |
Low | No | 2080 | Get ORF Coding potential... Type: noncoding Potential: -1.266 Folding energies... MFEI: -31.731 AMFE: -0.685 GC content %: 46.298 | |
Sbicolor_Sobic.007G046950.4 Sobic.007G046950.4 PAC:32750685 |
Low | No | 2217 | Get ORF Coding potential... Type: noncoding Potential: -1.173 Folding energies... MFEI: -29.783 AMFE: -0.681 GC content %: 43.753 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Sbicolor_Sobic.007G046950.1 | RepBase (RepeatMasker) | 2014-01-31 | LINE1-74_SBi | |
Sbicolor_Sobic.007G046950.2 | RepBase (RepeatMasker) | 2014-01-31 | LINE1-74_SBi | |
Sbicolor_Sobic.007G046950.3 | RepBase (RepeatMasker) | 2014-01-31 | LINE1-74_SBi | |
Sbicolor_Sobic.007G046950.4 | RepBase (RepeatMasker) | 2014-01-31 | LINE1-74_SBi |