GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Sbicolor_Sobic.007G220033 Sobic.007G220033	Chr07	64826012	64827147	Phytozome	v3.1	Sorghum_bicolor	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Sbicolor_Sobic.007G220033.1 Sobic.007G220033.1 PAC:32751548	High	No	686		Get ORF Coding potential... Type: noncoding Potential: -0.810 Folding energies... MFEI: -31.399 AMFE: -0.614 GC content %: 51.166
Sbicolor_Sobic.007G220033.2 Sobic.007G220033.2 PAC:32751549	High	No	647		Get ORF Coding potential... Type: noncoding Potential: -0.793 Folding energies... MFEI: -30.433 AMFE: -0.613 GC content %: 49.614

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).