Gene
Sbicolor Sobic.009G099600
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Sbicolor_Sobic.009G099600 Sobic.009G099600 |
Chr09 | 38869328 | 38871647 | Phytozome | v3.1 | Sorghum_bicolor | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Sbicolor_Sobic.009G099600.1 Sobic.009G099600.1 PAC:32736176 |
High | No | 657 | Get ORF Coding potential... Type: noncoding Potential: -1.114 Folding energies... MFEI: -26.575 AMFE: -0.606 GC content %: 43.836 | |
| Sbicolor_Sobic.009G099600.2 Sobic.009G099600.2 PAC:32736178 |
High | No | 665 | Get ORF Coding potential... Type: noncoding Potential: -1.102 Folding energies... MFEI: -26.737 AMFE: -0.611 GC content %: 43.759 | |
| Sbicolor_Sobic.009G099600.3 Sobic.009G099600.3 PAC:32736174 |
High | No | 1286 | Get ORF Coding potential... Type: noncoding Potential: -1.300 Folding energies... MFEI: -24.969 AMFE: -0.665 GC content %: 37.558 | |
| Sbicolor_Sobic.009G099600.4 Sobic.009G099600.4 PAC:32736175 |
High | No | 787 | Get ORF Coding potential... Type: noncoding Potential: -1.160 Folding energies... MFEI: -25.489 AMFE: -0.576 GC content %: 44.219 | |
| Sbicolor_Sobic.009G099600.5 Sobic.009G099600.5 PAC:32736177 |
High | No | 795 | Get ORF Coding potential... Type: noncoding Potential: -1.145 Folding energies... MFEI: -25.686 AMFE: -0.582 GC content %: 44.151 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
