GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Sbicolor_Sobic.009G104300 Sobic.009G104300	Chr09	42031041	42032808	Phytozome	v3.1	Sorghum_bicolor	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Sbicolor_Sobic.009G104300.1 Sobic.009G104300.1 PAC:32737019	High	No	1220		Get ORF Coding potential... Type: noncoding Potential: -1.089 Folding energies... MFEI: -32.607 AMFE: -0.622 GC content %: 52.459
Sbicolor_Sobic.009G104300.2 Sobic.009G104300.2 PAC:32737020	High	No	1562		Get ORF Coding potential... Type: noncoding Potential: -1.134 Folding energies... MFEI: -30.570 AMFE: -0.626 GC content %: 48.848

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).