Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Sbicolor_Sobic.009G258800 Sobic.009G258800 |
Chr09 | 59237282 | 59238959 | Phytozome | v3.1 | Sorghum_bicolor | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Sbicolor_Sobic.009G258800.1 Sobic.009G258800.1 PAC:32736413 |
High | No | 848 | Get ORF Coding potential... Type: noncoding Potential: -1.320 Folding energies... MFEI: -24.198 AMFE: -0.547 GC content %: 44.222 | |
Sbicolor_Sobic.009G258800.3 Sobic.009G258800.3 PAC:32736411 |
Low | No | 1465 | Get ORF Coding potential... Type: noncoding Potential: -1.129 Folding energies... MFEI: -29.372 AMFE: -0.646 GC content %: 45.461 | |
Sbicolor_Sobic.009G258800.4 Sobic.009G258800.4 PAC:32736412 |
Low | No | 1440 | Get ORF Coding potential... Type: noncoding Potential: -1.127 Folding energies... MFEI: -29.736 AMFE: -0.652 GC content %: 45.625 | |
Sbicolor_Sobic.009G258800.5 Sobic.009G258800.5 PAC:32736414 |
Low | No | 1326 | Get ORF Coding potential... Type: noncoding Potential: -1.331 Folding energies... MFEI: -29.442 AMFE: -0.631 GC content %: 46.682 | |
Sbicolor_Sobic.009G258800.6 Sobic.009G258800.6 PAC:32736415 |
Low | No | 1195 | Get ORF Coding potential... Type: noncoding Potential: -1.323 Folding energies... MFEI: -29.766 AMFE: -0.627 GC content %: 47.448 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Sbicolor_Sobic.009G258800.3 | RepBase (RepeatMasker) | 2014-01-31 | DNA-8-1N_SBi | |
Sbicolor_Sobic.009G258800.4 | RepBase (RepeatMasker) | 2014-01-31 | DNA-8-1N_SBi | |
Sbicolor_Sobic.009G258800.5 | RepBase (RepeatMasker) | 2014-01-31 | DNA-8-1N_SBi | |
Sbicolor_Sobic.009G258800.6 | RepBase (RepeatMasker) | 2014-01-31 | DNA-8-1N_SBi |