Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Sbicolor_Sobic.010G128500 Sobic.010G128500 |
Chr10 | 16883510 | 16885290 | Phytozome | v3.1 | Sorghum_bicolor | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Sbicolor_Sobic.010G128500.1 Sobic.010G128500.1 PAC:32725628 |
Low | Yes | 970 | Get ORF Coding potential... Type: noncoding Potential: -1.154 Folding energies... MFEI: -34.804 AMFE: -0.669 GC content %: 52.062 | |
Sbicolor_Sobic.010G128500.2 Sobic.010G128500.2 PAC:32725627 |
Low | Yes | 981 | Get ORF Coding potential... Type: noncoding Potential: -1.155 Folding energies... MFEI: -34.404 AMFE: -0.663 GC content %: 51.886 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Sbicolor_Sobic.010G128500.1 | RepBase (RepeatMasker) | 2014-01-31 | EnSpm5_SB | |
Sbicolor_Sobic.010G128500.2 | RepBase (RepeatMasker) | 2014-01-31 | EnSpm5_SB |