GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Sbicolor_Sobic.010G137100 Sobic.010G137100	Chr10	21131552	21134473	Phytozome	v3.1	Sorghum_bicolor	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Sbicolor_Sobic.010G137100.2 Sobic.010G137100.2 PAC:32725410	High	No	1736		Get ORF Coding potential... Type: noncoding Potential: -0.992 Folding energies... MFEI: -27.926 AMFE: -0.611 GC content %: 45.737
Sbicolor_Sobic.010G137100.3 Sobic.010G137100.3 PAC:32725411	High	No	1887		Get ORF Coding potential... Type: noncoding Potential: -0.998 Folding energies... MFEI: -27.361 AMFE: -0.612 GC content %: 44.674
Sbicolor_Sobic.010G137100.4 Sobic.010G137100.4 PAC:32725412	High	No	1781		Get ORF Coding potential... Type: noncoding Potential: -0.994 Folding energies... MFEI: -27.973 AMFE: -0.614 GC content %: 45.592
Sbicolor_Sobic.010G137100.5 Sobic.010G137100.5 PAC:32725413	High	No	751		Get ORF Coding potential... Type: noncoding Potential: -1.163 Folding energies... MFEI: -26.298 AMFE: -0.633 GC content %: 41.545

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).