Gene

Sbicolor Sobic.K003800

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Source Assembly Species Details

Sbicolor_Sobic.K003800
Sobic.K003800
super_11 6374908 6377285 Phytozome v3.1 Sorghum_bicolor
Coding?
Yes


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Sequence Details

Sbicolor_Sobic.K003800.1
Sobic.K003800.1
PAC:32734156
Low No 835
Coding potential...
Type: noncoding Potential: -0.776
Folding energies...
MFEI: -26.743 AMFE: -0.592
GC content
%: 45.150


Matches to external databases
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The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias Database Version Hit Evalue
Sbicolor_Sobic.K003800.1  RepBase (RepeatMasker) 2014-01-31 EnSpm-15_OS


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

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