GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Sbicolor_Sobic.K028000 Sobic.K028000	super_2910	279	3580	Phytozome	v3.1	Sorghum_bicolor	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Sbicolor_Sobic.K028000.1 Sobic.K028000.1 PAC:32741156	Low	No	467		Get ORF Coding potential... Type: noncoding Potential: -1.192 Folding energies... MFEI: -23.383 AMFE: -0.538 GC content %: 43.469
Sbicolor_Sobic.K028000.2 Sobic.K028000.2 PAC:32741157	Low	No	463		Get ORF Coding potential... Type: noncoding Potential: -1.080 Folding energies... MFEI: -23.326 AMFE: -0.535 GC content %: 43.629
Sbicolor_Sobic.K028000.3 Sobic.K028000.3 PAC:32741158	Low	No	635		Get ORF Coding potential... Type: noncoding Potential: -1.283 Folding energies... MFEI: -24.520 AMFE: -0.588 GC content %: 41.732

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).