Gene
Sitalica Seita.1G114400
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Sitalica_Seita.1G114400 Seita.1G114400 |
scaffold_1 | 9944945 | 9946209 | Phytozome | v2.2 | Setaria_italica | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Sitalica_Seita.1G114400.1 Seita.1G114400.1 PAC:32696804 |
Low | Yes | 576 | Get ORF Coding potential... Type: noncoding Potential: -1.143 Folding energies... MFEI: -42.326 AMFE: -0.655 GC content %: 64.583 | |
| Sitalica_Seita.1G114400.2 Seita.1G114400.2 PAC:32696806 |
Low | Yes | 1117 | Get ORF Coding potential... Type: noncoding Potential: -1.110 Folding energies... MFEI: -40.116 AMFE: -0.667 GC content %: 60.161 | |
| Sitalica_Seita.1G114400.3 Seita.1G114400.3 PAC:32696807 |
Low | Yes | 933 | Get ORF Coding potential... Type: noncoding Potential: -1.211 Folding energies... MFEI: -41.779 AMFE: -0.663 GC content %: 63.023 | |
| Sitalica_Seita.1G114400.4 Seita.1G114400.4 PAC:32696808 |
Low | Yes | 1114 | Get ORF Coding potential... Type: noncoding Potential: -1.110 Folding energies... MFEI: -40.135 AMFE: -0.666 GC content %: 60.233 | |
| Sitalica_Seita.1G114400.5 Seita.1G114400.5 PAC:32696809 |
Low | Yes | 936 | Get ORF Coding potential... Type: noncoding Potential: -1.202 Folding energies... MFEI: -41.795 AMFE: -0.664 GC content %: 62.927 | |
| Sitalica_Seita.1G114400.6 Seita.1G114400.6 PAC:32696805 |
Low | Yes | 573 | Get ORF Coding potential... Type: noncoding Potential: -1.153 Folding energies... MFEI: -42.670 AMFE: -0.659 GC content %: 64.747 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
