GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Sitalica_Seita.1G175700 Seita.1G175700	scaffold_1	25347937	25350244	Phytozome	v2.2	Setaria_italica	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Sitalica_Seita.1G175700.1 Seita.1G175700.1 PAC:32694783	High	No	1039		Get ORF Coding potential... Type: noncoding Potential: -0.963 Folding energies... MFEI: -25.784 AMFE: -0.550 GC content %: 46.872
Sitalica_Seita.1G175700.2 Seita.1G175700.2 PAC:32694784	High	No	1033		Get ORF Coding potential... Type: noncoding Potential: -0.962 Folding energies... MFEI: -26.244 AMFE: -0.549 GC content %: 47.822
Sitalica_Seita.1G175700.3 Seita.1G175700.3 PAC:32694785	High	No	874		Get ORF Coding potential... Type: noncoding Potential: -1.116 Folding energies... MFEI: -25.549 AMFE: -0.530 GC content %: 48.169

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).